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Effects of Polar Light Cycle on Microbial Food Web
Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Laboratory (Berkeley Lab). The work was enabled by the JGI’s Community Science Program. For most months each year, …
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How to Target a Microbial Needle within a Community Haystack
… cycles remains unexplored and uncultivated. Developing a more targeted genomic approach would allow … overcome this hurdle, a team led by Bernhard Fuchs and his postdoctoral researcher Anissa Grieb at the MPI for Marine … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Community Resource for Secondary Metabolite Researchers
The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Laboratory, built off past experience in developing a secondary metabolites portal within the Integrated … from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed with two main objectives. First …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … for computational analysis of the AT enzyme family, the JGI provided DNA synthesis capabilities to enable functional … testing of these enzymes. Yasuo Yoshikuni, head of the JGI’s DNA Synthesis Science program, underscored the value …
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The Power of One, Amplified
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … was performed by Danielle Goudeau and Rex Malmstrom of the JGI’s Microscale Applications group . Cells were randomly … Research Council of Canada (NSERC) Discovery Grant to PFD (2019-06265). This work was also sponsored by NSF grants …
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Busting the Unbreakable Lignin
Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the …
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Finding the Fermenters
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … metabolism from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the … of more than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict …
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How Maize Makes An Antibiotic Cocktail
… as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  … by a DOE Joint Genome Institute Community Science Program (JGI-CSP) grant (CSP2568 to P.Z., ES and AH), and by a …
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Making a Lichen Together
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the JGI contributed to annotation of the genomes, available …
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Ancient Algae Reveal Secrets of Plant Evolution
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The algal genomes sequences are available on the JGI’s  PhycoCosm portal. … This work was funded by the US …
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Benjamin Cole
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