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… after she left the JGI. “Biotin DAP-seq is a unique quick protein purification approach,” O’Malley said. “It provides … sites.” The technology expresses the transcription factor proteins from a DNA template amplified directly from either … (cDNA), reducing the amount of time it takes to produce a dataset from months to days and halving the total reagent …

… to extract meaningful biological insights from sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation using public datasets.  … distribution of prokaryotic microbial genome and microbiome datasets. It includes JGI-sequenced and publicly available …

… The PhycoCosm data portal allows anyone to freely investigate the genes of … photosynthetic organisms. PhycoCosm is one of the largest data repositories of its kind, with an interactive browser … may tune gene expression; and investigate corresponding proteins. PhycoCosm’s built-in connection to the DOE Systems …

… by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the … to a high quality modern standard and includes RNA-seq data. The improved  T. cacao Matina 1-6 genome is now … Theobroma cacao on Phytozome Data Portal …

… acids are assembled, which then band together to build proteins. What Wint and her mentors discovered in the … ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted … the research question and applied it to such a large data set, but also went all the way through to convert her …

… IMG/VR data portal …

… samples in a single experiment — and integrated these data with single-cell gene expression maps. Together, the scale of data enabled by these approaches creates a vast resource … located at Lawrence Berkeley National Laboratory. “These proteins’ binding preferences are very, very stable over …

… Serpula lacrymans on MycoCosm Data portal … Serpula humantioides on MycoCosm Data portal … Datasets … Datasets …

… for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …

… Morel Mushrooms on MycoCosm Data Portal …

… and analysis of Mobile Genetic Elements from Metagenomic Data.  Mateus’s GitHub …