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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … on these advances. Over the last two decades, Stable Isotope Probing (SIP) has opened vast windows into specific … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Fungal & Algal Program User Advisory Committee
… & Algal Program Advisory Committee is chartered by the Science Program Heads and report back to them. The Committee …
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Nikos Kyrpides
… on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for enabling …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of Bacteria and Archaea (GEBA) initiative. “This project has helped to define the current shape of the … – and could have applications in many fields. The team discovered that rampant horizontal gene transfer and …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) Applications Webinar inviting … to reach that maximum with broader questions and broader project scope? A: Focus on strong science and … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … fellow in the Juenger lab and continues to work on the project from a lab at Michigan State University that is … these existing plantings, and then trying to leverage these discoveries to better understand how plants tolerate …
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Extracting the Secrets of Secondary Metabolites
… helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not … As a demonstration, the researchers used CRAGE-CRISPR for discovering active secondary metabolites and helping them … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The fungus that made itself at home
… Serpula lacrymans adapted to a new ecological habitat. The Science By comparing genetic information from similar … researchers at the Joint Genome Institute, a DOE Office of Science User Facility, compared the genomes of two strains … from Europe, that was sequenced and analyzed by the JGI. The researchers found that S. lacrymans var. lacrymans …
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Fishing for Novel Cellulose Degraders
… hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of potential applications to industrial processes. Summary JGI researchers developed a function-driven, single-cell …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… omics methods to examine microbial chemical production. The Science Soil bacteria in the genus Streptomyces are nature's … of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of … chemistry in their organisms of interest — accelerating discovery of bio-based chemicals and materials that …
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Busting the Unbreakable Lignin
… fungi can degrade the hardiest of plant components   The Science There are three main ingredients to tackle when it … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the …
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Stop codon reassignments in the wild
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