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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… On July 30, UC Merced students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was … JGI staff. According to Axel Visel and Zhong Wang, founders of this internship program, this was the largest turnout for …
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Tracking the Origins of Methane-Producing Microbes
… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … These two things combined led us to conclude that our new methanogen did not belong to the Euryarchaeota, the …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … DNA floats freely within the cytoplasm of their cells. This newly discovered species of bacteria keeps its DNA more …
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Atif Shahab
… Since 2012, Mr. Shahab has led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. This … tracking, and enables efficient analysis and reporting of sequencing projects and their status. Mr. Shahab has … BS in Electrical Engineering, University of New South Wales, Australia; MS in Computer Science, …
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Gene Expression: From On-Off Switch to Dial
… to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. … approach to fine-tune gene expression. They tested this new methodology in yeast ( Saccharomyces cerevisiae) to …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Genome Insider
… Insider podcast brings listeners into the science that the JGI makes possible. Each episode, host Menaka Wilhelm interviews researchers — JGI Users — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. …
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the … evolved separately from other similar systems, and offers new clues into a unique environment in the natural world. … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published …
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Disclaimer
… resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring of this use by system or security personnel. … neither the United States Government nor the University of California nor any of their employees, makes any …
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