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Tracking the Origins of Methane-Producing Microbes
… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … These two things combined led us to conclude that our new methanogen did not belong to the Euryarchaeota, the …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of … in the haloarchaeal gene pool, a team led by University of New South Wales (UNSW)-Sydney professor Rick Cavicchioli … as the total pool of genetic material comprised by all members of a species, the pan-genome of haloarchaea contains …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials … Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley Lab. She is spearheading the … PhD, Microbiology and Cell Science, University of Florida NIH Postdoctoral Researcher, UCLA …
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Gene Expression: From On-Off Switch to Dial
… to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. … approach to fine-tune gene expression. They tested this new methodology in yeast ( Saccharomyces cerevisiae) to …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Genome Insider
… Insider podcast brings listeners into the science that the JGI makes possible. Each episode, host Menaka Wilhelm interviews researchers — JGI Users — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. …
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
… Phytozome is the Plant Comparative Genomics portal of the Department of Energy Joint Genome Institute, and facilitates accurate …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the … evolved separately from other similar systems, and offers new clues into a unique environment in the natural world. … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. … In this role he supervises the Genome Assembly, QA/QC, and User Support Analysis teams. Together, these teams provide … in human and other vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research …
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