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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly … 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. … … The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) conducted by the US Department of …
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JGI announces 2023 CSP Functional Genomics awardees
… and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the six researchers accepted for 2023. Proposals are accepted year-round; the next deadline is Jan. 29, 2024.  …
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JGI announces 2024 Functional Genomics awardees
… and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions allows … Below find a list of the nine researchers accepted for 2024. Proposals are accepted year-round; the next deadline is …
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Forest Fungi, Seagrass, and a New View of Symbiosis
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John Vogel
… techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress … Brachypodium. Genetics, 223 (2), art. no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 Gradual polyploid … study shows highly reproducible physiology and depletion of soil metabolites by a model grass New Phytologist 222: …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… researchers worldwide.  Q:  To what extent is natural soil a limit to identify molecules exchanged between plants … Annotation and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. … (uM etc).  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca
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Trent Northen
Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  p.eadg7888. … bacterial polyphenol metabolism in an anoxic wetland soil. Nat Commun. 2021 Apr 29;12(1):1-6. …
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … viruses (from environmental metagenome samples) from IMG/VR , a database that is part of the Integrated Microbial … suite, as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. CheckV identified a …
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JGI announces final round of 2022 Functional Genomics awardees
… and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final six researchers accepted for 2022. Proposals are accepted year-round; the next deadline is …
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the … them without previously known representatives). Of these, 89 contigs were considered to be complete genomes, and their …
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JGI Announces 2025 New Investigator Portfolio
… a list of researchers whose proposals were accepted for 2025. Utilizing the JGI’s resources, these researchers will … plant interactions across unique ecosystems, from alpine soils to tropical glaciers.  Proposals are accepted … call; the next deadline for proposal submission is Sept. 9, 2025, for inclusion in the November 2025 review. You can …
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