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Forming Scientific Connections and Building Community
… pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome … gene cluster annotation by leveraging a large genomic model ” Leonel Gonzalez : “It’s been great having been able … Sajeet Haridas & Asaf Salamov Project: “ Improving the JGI fungal mitochondrial annotation pipeline ” Anna Kucherova : …
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You Can Move, But You Can’t Hide
Researchers at the JGI develop a tool to quickly and accurately … researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the U.S. Department of Energy … with more than 15 million viral genomes. It was also key to developing the first version of the  IMG Plasmid Resource …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
More than 20 UC Merced students have contributed to the research of … in Visel’s Genomics of Plant-Microbial Interactions Group who has mentored several of the students including … illness, disease risk, and treatment response due to fungal genomics internship with Igor Grigoriev. Portia Mira …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI … Roux, a member of Eloe-Fadrosh’s Environmental Genomics group, makes a pitch for readers to get involved in the developing field of virus ecogenomics. While microbes …
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Nick Everson
Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, … representing Berkeley Lab in this UC-wide staff advocacy group … Education … About the JGI Deputy Director of …
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MycoCosm Tutorial
Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* … genome assemblies. [Download PDF] Q2 – Report on progress developing new experimental capabilities to analyze complex …
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How Maize Makes An Antibiotic Cocktail
Maize produces a family of compounds that protects it against … in every corn variety and protect maize by fending off fungal and microbial infections. Scientists had assumed that … called terpenoids, which have a structure belonging to a group of chemicals called terpenes. Terpenes are important …
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Rex Malmstrom
Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first … consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. Later during his postdoctoral work at …
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JGI Scientists Pen Genome Watch Articles
Tanja Woyke and other JGI researchers made their debut … researcher Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program lead Igor Grigoriev took readers on … romp through the  evolution and domestication of yeast , a model eukaryote. The wide array of topics comes from the …
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with …
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