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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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The metagenome of the marine anammox bacterium ‘Candidatus Scalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium
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Metagenomes from Experimental Hydrologic Manipulation of Restored Coastal Plain Wetland Soils (Tyrell County, North Carolina)
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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days
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Comparison of short-read and long-read metagenome assemblies in a natural soil community highlights systematic bias in recovery of high-diversity populations
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Gone with a trace: cataloguing the disappearing gut microbes
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Green Algae Reveal One mRNA Encodes Many Proteins
… Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a single protein. Gene expression in eukaryotes was long held … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … existing methodologies developed for natural languages to study genomes,” Wang explained.  And since microbial genomes … by JGI users, GenomeOcean also utilized large-scale metagenomic assemblies from three terabase-scale (Tb) …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… between fungal guilds, genes and function. If a tree falls in the forest — whether or not anyone registers the sound — … Remarkable Similarity Despite Vast Diversity For this study, researchers collected soil samples from four sites: … as meadows and pastures: saprotrophs disassemble debris and dead organisms to free up their nutrients; mycorrhizal …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes … to changing environments. The Science The first step in the deadly dance between a virus and microbial cell is an … the dice. There’s some evidence to support the idea. Study coauthor Stephen Nayfach, a JGI bioinformatics …
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures
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