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Doubling Down on Known Protein Families
… the collective power of more than 26,000 microbiome datasets, all accessible through the publicly available  … Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the Novel Metagenome … Protein Families (NMPF) Catalog.  “We can now analyze new datasets by comparing against these protein families, or …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Nikos Kyrpides, Natalia Ivanova and Simon Roux, along with data from a consortium that included Susannah Tringe and …
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Waiting to Respire
… Communications , two research teams joined forces and data sets to describe bacterial genomes for related … Carnevali and Schulz sharing co-first authorship. Their data suggests that the shared common ancestor of all five … National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation …
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Enlarging Windows into Understanding Gene Functions
… Berkeley National Laboratory (Berkeley Lab). And one of the tools that researchers can apply to study the transcription … (cDNA), reducing the amount of time it takes to produce a dataset from months to days and halving the total reagent … these two new methods as a high-throughput JGI capability supported by liquid-handling robotics.” Helps Drive User …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… of a virus relative to its host (inferred through sequence data) can suggest different predatory behaviors. A high … Winner” — “Piggyback the Winner.” In the microbial mat, the data suggest viruses are indeed piggybacking their hosts. … terrestrial environment with low mobility. The metagenomic data suggests that viruses don’t diffuse well through the …
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Adopt-A-Genome
… write reports, and publish first-author papers, making the data available for future research. Hear from Rekha Seshadri …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in the journal … metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds light on the … Council of Canada (NSERC) Discovery program grants to C.L. Support from the Canada First Research Excellence Fund to Sentinelle Nord is acknowledged. Additional support was by way of the Fonds de recherche du Québec - …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge … — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research …
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JGI at the AGU Fall Meeting
… Lab (short talk): “How do we make interdisciplinary sample data more FAIR?” December 16 7:55am, Convention Center Rm … “EMSL’s 1000 Soils Project: core collection strategy and data types available” December 17  6:40am Convention Center … Weisenhorn, KBase at Argonne (lightning talk): “Applying Data Standards and Reproducible Workflows To Advance Earth …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… funded by the National Science Foundation (NSF) that supports underrepresented minorities in science, technology, … early stages, so I can begin biological analysis of the data sooner than I anticipated.” In her message, Dumont … the initiation of the Venomous Host-Microbe Consortium. Data produced during Ul-Hasan’s JGI internship led to her …
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Annual Genomics of Energy & Environment Meeting
… infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – that the …
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