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User Advisory Committees
… US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core values, which guide the relationships we nurture in our workplace and seek to establish … The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the …
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Examples: Successful LOIs & Submissions
… below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated temperatures …
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Intersubunit Coupling Enables Fast CO2‑Fixation by Reductive Carboxylases
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CO2-converting enzymes for sustainable biotechnology: from mechanisms to application
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … SAR324 exist in so many varied environments? Now, a recent study published in Microbiome has uncovered that SAR324 … sequenced community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of …
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An Automated Tool for Assessing Virus Data Quality
… Through advances in sequencing technologies and computational approaches, more and more virus sequences are being recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … The work was led by research scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
…   On November 3, 2021, the JGI and the Workforce Development & … were: Simon Roux and Matthew Kellom for the JGI Metagenome Program Ellen Dow and Elisha Wood-Charlson for … Metabolomics Platform Blake Simmons for The BioManufactory Completed VFP applications are due on January 12, 2022. …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The … sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and … the dice. There’s some evidence to support the idea. Study coauthor Stephen Nayfach, a JGI bioinformatics …
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JGI Scientists Pen Genome Watch Articles
… Reviews Microbiology column last year — and there’s more to come in 2020. Researchers at the U.S. Department of Energy … of Science User Facility located at Lawrence Berkeley National Laboratory, are sharing their expertise in … characterizing the human microbiome  by its genomes and metagenome , rather than just by 16S ribosomal RNA gene …
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JGI Early Career Researchers Featured in mSystems Special Issue
… issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five … article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … and experimental approaches with the aim of eventually studying virus-host dynamics in nature. In the last few …
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Complete Genome of the Cellulolytic Ruminal Bacterium Ruminococcus albus 7
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