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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… and characterized a novel phylum-level lineage of archaea with at least two major subgroups dubbed Marsarchaeota. The … into the evolution of life on Earth. For decades, longtime JGI collaborator Bill Inskeep of Montana State University … (gene expression), and direct microscopy. Through the JGI’s Community Science Program , the team used metagenome …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a … be engineered. “Piloting access to this emerging technology with JGI users will enable us to assess CRAGE’s impact, … CRAGE in a select group of bacterial strains as part of the Community Science Program (CSP)  Functional Genomics …
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DAS Tool for Genome Reconstruction from Metagenomes
… genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , … The Impact Understanding how individual microbes interact with each other in a community, and characterizing their individual … Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. …
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Single Nucleotide Polymorphism Charting of P. patens Reveals Accumulation of Somatic Mutations During in vitro Culture on the Scale of Natural Variation by Selfing
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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome … generative model  now available to the global research community able to not just analyze but also create DNA … language of biology — and primed for integration with artificial intelligence tools.  LLMs aren’t just for …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… in the tube look like a scoop of stormwater, complete with leaves, debris, and even lighter threads in the mix. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Gamete expression of TALE class HD genes activates the diploid sporophyte program in Marchantia polymorpha
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Metabolomics Technology Group
… Our lab is using mass spectrometry based metabolite profiling to provide direct biochemical datasets to improve our … dynamic metabolite networks of environmental microbes and how they transform their environment. Research Team    … For further details, please reach out to the Group Lead …
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Ecological Assembly Processes Are Coordinated between Bacterial and Viral Communities in Fractured Shale Ecosystems
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MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration
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