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Polar Phytoplankton Need Zinc to Cope with the Cold
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … a cold-adapted microalga: the diatom Fragilariopsis cylindrus . At that time, they noted that the F. cylindrus genome encoded more proteins requiring zinc than …
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Tanja Woyke Elected to American Academy of Microbiology
Lab’s 2015 Women @ the Lab honorees. Woyke’s research focuses on developing and harnessing single-cell methods to … published in Nature , applied single-cell sequencing to decode genomes of bacteria and archaea from previously … who spoke at the 2019 New Lineages of Life (NeLLi) Meeting organized by the JGI, were also among the AAM Fellows in …
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Building on Experience, With a Twist?
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Gut Fungi: Unexpected Source of Novel Chemicals
… off early from aerobic fungi, which can breathe oxygen — just like we do. Oxygen is a rich source of energy, and because anaerobic fungi can’t harness it, scientists long held … source of antibiotics. Indeed, these anaerobic fungi may be using these compounds for self-defense. But the compounds …
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Honey Bee Gut Microbiota Divvy Up Dinner
… of the National Academy of Sciences . The team focused on the dominant bacterial clades shared between honey … pollen’s pectin and hemicellulose are degraded mainly by just two clades:  Gilliamella,  which mostly resides in the … appears to be happening is a kind of movable feast being deconstructed as it goes through the honey bee gut. Early …
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Accelerating Metagenomics Discoveries with Deep Learning
… of machine learning, data is passed through algorithms organized into multiple interconnected layers. The … workshop, Volkan Sevim, a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), … that low sequence identity may belie. The technology he’s using is magical; transform any length of amino acid …
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The JGI Data Portal: Improving User Experience
… between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download … processes from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal … scientists to search for specific types of data across organisms, enabling them to conduct more complex types of …
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Dispatches From JGI Interns
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Training the Next Generation of Talent
Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start … instructions for building and maintaining cells through the use of deep-sequencing technologies. The internship program …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… the genetic codes of plants is often challenging because in many plants chromosomes are present in more than two … (due to extinction or you didn’t sample it). But once we deciphered the subgenomes we came up with a simple series of … an early algorithm and developing it in order to talk about the subgenome identity.”  These days, Session is …
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Mindfully Moving JGI
… from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in … home located in the heart of the Berkeley Lab main campus. On Monday, November 11, a week after they’d been  moved … those days, they were asked to “KonMari” their spaces, a decluttering method focused on keeping only items that bring …
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JGI Accepts 17 Proposals for Community Science Program
Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of 50 letters of intent submitted. Many of the proposals focus on harnessing genomics to developing sustainable …
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