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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready … To put this evolutionary timescale in perspective, the genus Aspergillus has been evolving for 82 million years, … and ancient origins, fungi remain largely mysterious. Only about 200,000 fungal species have been named. Among those …
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Tracking the Origins of Methane-Producing Microbes
… the total global methane production. They are thought to use billions of tons of the carbon dioxide trapped in … on the global carbon cycle. All methanogenic archaea use one of three pathways for methanogenesis: … and, acetoclastic. All three pathways require the gene cluster for methane production known as Mcr. Until recently, …
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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De novo mutations mediate phenotypic switching in an opportunistic human lung pathogen
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Matt Blow
… In this role he supervises the Genome Assembly, QA/QC, and User Support Analysis teams. Together, these teams provide analysis support and R&D for production and user science. He received his Ph.D. from the Wellcome Trust Sanger Institute and Cambridge University University in …
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JGIota: Sequencing Shiitakes with David Hibbett
… David Hibbett of Clark University fills us in on the kind of decay that makes shiitake mushrooms special. This week, he and 39 collaborators …
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Ian Blaby
… the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and … a group lead at Brookhaven National Laboratory where he focused on functional genomics of phototrophs. Through this and … systems. PloS one. 15: 11. 2020 Blaby & Cheng, Building a custom high-throughput platform at the Joint Genome Institute …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a … through a process called methanogenesis. Methanogenic microorganisms therefore play a critical role in the global … Alternate Metabolic Pathways And there is something special about these new lineages recently tied to methanogenesis. …
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which … and more. And eventually, their findings could help us grow better crops, with less impact on our planet. …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… applications, and breeders aren’t interested in waiting decades to develop new crops. One example is an ongoing … team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … USDA-ARS, Arizona Genomics Institute, University of Georgia, Athens, Clemson University, Marshall University, …
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