Results

Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood
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Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing
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Gotta Catch 'Em Gall
BioEnergy Institute) are looking for new ways to engineer plants. So they’ve looked into wasps that program oak trees … called galls.  In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these …
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Accelerating Metagenomics Discoveries with Deep Learning
… workshop, Volkan Sevim, a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … that low sequence identity may belie. The technology he’s using is magical; transform any length of amino acid …
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Quantitative iTRAQ-based secretome analysis reveals species-specific and temporal shifts in carbon utilization strategies among manganese(II)-oxidizing Ascomycete fungi
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A Genomic Perspective Across Earth’s Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy
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Supercharging SIP in the Fungal Hyphosphere
… have successfully automated aspects of a commonly-used process for studying microbial communities, with … most widespread type of mycorrhizal fungi, live within a plant’s root system. They form mutually beneficial … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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Honey Bee Gut Microbiota Divvy Up Dinner
… of the National Academy of Sciences . The team focused on the dominant bacterial clades shared between honey … appears to be happening is a kind of movable feast being deconstructed as it goes through the honey bee gut. Early … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Annual Genomics of Energy & Environment Meeting
Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting! The JGI convenes this annual gathering of leaders from diverse …
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Toward More Efficient Artificial Photosynthesis
… cycle. The Science Chloroplasts are the factories in plant cells. Using photosynthesis, they take raw materials including … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A bacterial toolkit for plants
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Partnerships: Myco-Ed
DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … The … analysis.  MycoCosm provides data and tools via a graphical user interface, ensuring that no programming knowledge or … is required to perform computational analyses. The Mycocosm user interface is designed for use by mycologists and …
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