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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants … transferable to other systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. … Foundation, and the JGI Synthesis Program under FP00005685. In addition, M.D. acknowledges funding from a National …
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Natural Prodcast
… species unique and different from one another. They are incredibly important to medicine, the environment, and human health. As the JGI acts on its goals in — and builds out its capabilities …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal … which there were previously no genomes of symbiotic species available: 73 saprotrophs and 62 mycorrhizal species. The 62 … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at the University of Texas at Austin, … his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student …
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The Case for Conservation
… How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science The … Carey, now at the HudsonAlpha Institute for Biotechnology, reported that high quality genome references are now … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database … and search through the more than 2 million viral sequences available in IMG/VR v3. …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … and removal of contamination from the host organism. As reported in Nature Biotechnology , a team from the U.S. …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science … and the greater bioeconomy. By bringing together publicly available genomic data on algae into one place, PhycoCosm … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … (VEGA) Symposium , which will take place later this year in Berkeley, Calif. Convening the “viral ecogenomics” …
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Outreach Stories
… Interested in reading more JGI intern and mentor success stories? Read more …
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A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing
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