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Calculating the Costs of Multiple Switchgrass Gene Copies
… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the … researcher Joseph Napier from the Juenger lab and computational biologist Paul Grabowski of HudsonAlpha … an unremarkable, homogenous group and raised several important questions. Where did the 8X variant come from? Did they …
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Operating Expenses
… funded primarily by the DOE Office of Biological and Environmental Research (BER), a program within the DOE Office of …
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A Complex Confection Decoded: Sugarcane Reference Genome
… work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, … other crops facing similar pathogens. Summary Many plants, sugarcane included, are polyploid and have multiple … 80% of sugar production worldwide, but has one of the most complex genetic blueprints. Assembling a genome has been …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. While … California-Baja coast and spots where they are most abundant are Monterey, San Diego, and Puerto Nuevo.” Ul-Hasan’s … I have today. I didn’t know anything about Principal Component Analysis (PCAs) when I first started, and overall …
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Hiroshi Otani
… Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly actinomycetes. His research activity is focused on developing and implementing new technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   … , DNA Synthesis and Metabolomics .  Many users rely on a multifaceted combination of genomic, transcriptomic, proteomic, …
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new technology development and … experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple … sugar, which is of interest to bioenergy researchers who want to develop sustainable alternative fuels. While more …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the norm when it comes to … Research Council (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… is a group of tiny hitchhikers. These organisms are abundant and yet exceptionally small, with mini genomes to match. As a result, they … acquire carbon efficiently and convert it to usable organic compounds. However, no microbe works alone. Archaea, … Investigator Program, through The Paul G. Allen Frontiers Group, the National Science Foundation (MCB-1244557 …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To … endobacteria, the Rhizopus fungus cannot act as a plant pathogen, it cannot reproduce asexually, and researchers … This research was supported by the National Science Foundation and the National Institutes of …
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Jeremy Schmutz
… working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed … the DOE human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community …
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