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JGI@25: Mapping Switchgrass Traits with Common Gardens
… 1,100 miles and eight states. In 2021, using switchgrass samples from these gardens, a team led by researchers at the … portal Phytozome. The combination of field data and genetic information has allowed the research team to associate …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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Scaling Up Existing Skill Sets
… researchers and help expand or develop more internship programs like the JGI Internship Program during my STEM … Overcoming a huge learning curve to utilize several programs in my project was worth it whenever I was able to …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… the biodegradation process, researchers collected microbial samples from wells at the site in 2007, 2009, and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department of Energy … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Using BLAST to Teach “E-value-tionary” Concepts
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A Guide to Gene‐Centric Analysis Using TreeSAPP
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Green Algae Reveal One mRNA Encodes Many Proteins
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab and the Environmental … Sciences Laboratory (EMSL), a DOE Office of Science user facility. The work was partly enabled by the “Facilities Integrating Collaborations for User Science” (FICUS) collaborative science initiative …
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Supercharging SIP in the Fungal Hyphosphere
… of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, have … to the process. This automation lets researchers study more samples and provides better resolution by splitting the DNA … limits the potential for human error that might compromise samples. In addition, high-throughput SIP places samples …
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JGI Scientists Pen Genome Watch Articles
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … our role as a Department of Energy Office of Science User Facility. As such, JGI is involved in a broad variety … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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DAP-seq Drives Robust Mapping of Gene Regulation
… techniques that allow simultaneous measurement of multiple samples in a single experiment — and integrated these data … DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … plants. Currently, this technology is available to JGI users for studies on organisms with smaller genomes, such as …
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An Earth Month Look at Sustainability Efforts at the JGI
… the JGI committed to using Stirling freezers to store samples, which use less than half as much energy as other … and helps detect problems with freezers storing precious samples. Another shift that happened when the JGI was still … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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JGI@25: From Life at the Extremes to Editing Genomes
… studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron Mountain, CA. … interest. As Doudna noted in her book, “These bits of information sent a little shiver of intrigue down my spine; …
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