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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research Program, Dr. Roux established … assesses the quality and completeness of metagenome-assembled viral genomes. Nature biotechnology 39, 578-585. …
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A Natural Mechanism Can Turbocharge Viral Evolution
… the microbial cell’s membrane. Two decades ago, a team discovered a group of viruses that had in their genomes a … of the U.S. Department of Energy under contract no. DE-AC02-05CH11231. This research used resources of the National … Research Council (DP150100244) and the Australian Antarctic Science program (project 4031). The work in the …
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Graduate Students Get Thesis Research Opportunity at the JGI
… of the latest call , a total of 70 graduate students from 52 universities were selected to carry out part of their thesis research at 12 host national laboratories or facilities between 3-12 consecutive months. Their proposed research projects …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years … of Nature Microbiology . Their study focuses on the discovery of new populations within the Korarchaeota, one of …
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Genome Sequence of Kosmotoga olearia Strain TBF 19.5.1, a Thermophilic Bacterium with a Wide Growth Temperature Range, Isolated from the Troll B Oil Platform in the North Sea
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … geNomad (watch Antonio Camargo present on IMG/VR v4 at the 2022 VEGA meeting below). Another JGI-developed tool, CheckV, …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… to drought, from a large-scale field experiment to uncover the mechanisms behind sorghum’s capacity to produce … For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be a Flagship Plant. By … supported by the Office of Science of the DOE Contract DE-AC02-05CH11231. D.P. is supported in part by the Berkeley …
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High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China
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Community Science Program
At the completion of a project, the JGI makes the assemblies, gene annotations, and analyses available to the …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s … There, standing at a safe distance, with proper face covering, was JGI’s Administrative Services Group lead …
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A Collaboration to Improve Plant Genome Annotations Across Species
… plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to … we are looking at 18 different species, which included over 2000 RNA Seq libraries. As I previously mentioned, this is … to standardize the experimental protocols. Then, in 2020, seven more groups joined the project to contribute to …
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Taking Stock of the Known and Unknown Microbial Space
… to the global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. Department … nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying quality scores … estimated diversity of the available datasets. Efforts to recover MAGs by extracting data directly from environmental …
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