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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those … send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks …
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A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities
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Busting the Unbreakable Lignin
… components   The Science There are three main ingredients to tackle when it comes to breaking down a plant for energy: … the remaining components into  biofuels and bioproducts. If anaerobic fungi could be used to effectively modify … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately identify mobile … can affect a microbe’s ability to cycle nutrients or produce new chemicals. They can also affect ecosystems by … and Environmental Research (BER) (89233218CNA000001 to L.A.N.L., DE-AC05-00OR22725 to O.R.N.L., DEAC05-76RL01830 …
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Cultivating Symbiotic Antarctic Microbes
… employed multiple microbiology and ‘omics techniques to experimentally determine that Nanohaloarchaeota are … and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … genome size. The obligate symbiont’s genome is often reduced compared to that of a free-living organism. First …
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Bacterial response to the 2021 Orange County, California, oil spill was episodic but subtle relative to natural fluctuations.
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers could open avenues for using bacteria to produce ethylene and more.  Microbes excel at recycling … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… In  Nature Communications , researchers describe a strategy to recover high value products from human waste. They   genetically modified yeast to … produced by living organisms. The collaboration between the JGI and the Foundry on this project highlights an  ongoing …
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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User Support Analysis Group
… computational analysis for new technology development and JGI user science projects. We perform analysis for diverse … with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the … of highly customized analysis workflows for new product types, to the development of automated analysis …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … of significant interest for their potential contributions to a sustainable bioeconomy, including, potentially, methane … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Tracking the Origins of Methane-Producing Microbes
… Identify Novel Archaeal Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the …
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