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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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Transcriptional and metabolic stasis define desiccation-induced dormancy in the soil bacterium Arthrobacter sp. AZCC_0090 until water vapor initiates resuscitation
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, the cells of other organisms. … can do. For example, understanding virus-host dynamics in soil microbiomes could allow for more accurate ecosystem … microbial genes. Eventually, whether the goal is improving soil microbiomes for carbon capture or removing harmful …
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Building Sphagnum Genomic Resources
… estimate that they hold about 25 percent of the world’s soil carbon. In high latitudes, sphagnum can also act as a …
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High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Pinpointing the processes happening on and in forest soil also better enriches models of global carbon and … what escapes to the atmosphere in the form of greenhouse gases (e.g., carbon dioxide, methane, and nitrous oxide). … needed to build a detailed database on the denizens in the soil. While large protein databases, like UniProt, exist, are …
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What Happens Underground Influences Global Nutrient Cycles
… (BER), Brodie and his colleagues have been running a soil-warming experiment in the Sierra Nevada mountain range … responses and feedbacks to warming through the whole soil profile. The goals of their FICUS proposal include … ground, influencing the production of microbial greenhouse gases and volatile organic compounds. This was the seventh …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… Portal were instrumental to  a study that looked into how soil viruses , and in particular a chitosanase protein, can contribute to soil health. He also contributed to an update of  the JGI’s … article detailing how forest floors, in particular the soil microbiome, recover post-wildfire . He and  Tringe were …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose debris, mobilize … that decay, and deliver those nutrients to tree roots and soil. These fungi help shape a forest’s ecology. They store … nitrogen and phosphorus.  This way, the fungi of forest soils hold keys to tree health and carbon storage — skills …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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