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Ken Chu
Ken leads the development and maintenance of analytical tools and user interface components for the IMG family of systems. …
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Expanding Virophage Diversity
… high quality virophage genome sequences 10-fold through computational approaches. By mining more than 14,000 … & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able … an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The work also used …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a … standards.  A year later, her team used proteomics, genomics and transcriptomics to discover another advantage … results showed that these fungi may be able to provide tools beyond biomass breakdown, extending into biochemical …
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What Happens Underground Influences Global Nutrient Cycles
… projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy … calls, users can combine EMSL’s unique imaging, omics and computational resources with JGI’s cutting-edge genomics, DNA synthesis and complementary capabilities. …
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Genome sequences of four novel Endozoicomonas strains associated with a tropical octocoral in a long-term aquarium facility.
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Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… plant species have adapted to their local environments; for example, crop and ornamental seeds sold for the upper … puzzle with just 50 pieces. The combination of new genetic tools and experimental gardens allow researchers to detect … The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific …
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JGI Launches Latest Strategic Plan
For the Joint Genome Institute, the end of 2018 was marked … has begun to the June dedication event of the Integrative Genomics Building—the new home of the JGI and KBase in the … newest 5-Year Strategic Plan: Beyond Basepairs — A Vision for Integrative and Collaborative Genome Science , the …
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Exploring the limit of metazoan thermal tolerance via comparative proteomics: thermally induced changes in protein abundance by two hydrothermal vent polychaetes
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JGI-UC Merced Interns Share Their 2021 Experiences
… in professional development enrichment activities. For some students in the 2021 cohort, this was their first … P. hallii Mutant Library … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional … for Complete Categorization of Genomic Variations … Comparative and Functional Genomic Analysis of Genus …
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Ancient Algae Reveal Secrets of Plant Evolution
… them to adapt to life on land. Learning that these genetic tools existed in close algal relatives  to terrestrial … of how plants adapted to terrestrial life paves the way for innovations in sustainable agriculture and clean energy. … discovered that ancient algae already possessed genetic tools to cope with environmental stresses such as drought …
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Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species
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