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Few-Shot Learning Enables Population-Scale Analysis of Leaf Traits in Populus trichocarpa
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Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi
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Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)
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Pangenome analysis of Liriodendron reveals presence/absence variations associated with growth traits
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science …
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Complete genome sequence of Olsenella uli type strain (VPI D76D-27CT)
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the … a  genomic look at Lentinula samples from around the world. By complete sequencing of 24 new mushroom genomes, and assembling … Innovation to P.F., and the NIH award R56AI146096 to A.R. J.L.S. and A.R. were supported by the HHMI and the Burroughs …
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The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
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Section-level genome sequencing and comparative genomics of Aspergillus sections Cavernicolus and Usti
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Danielle Goudeau
… Danielle operates the single-cell genomics pipeline for JGI … combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, and 16S sequencing. She also develops novel flow cytometry protocols …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea vents hold … and repair themselves or eliminate waste. The Impact The bacteria, archaea and other microorganisms of the microbial … Scientists with the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … scientists to study microorganisms that can’t be cultured by analyzing and then extrapolating data obtained from … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias …
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