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Computationally Classifying Fungal Lifestyles
Community Science Program (CSP) , as several approved proposals have contributed toward filling gaps on the fungal … Facility, is supported under Contract No. DE-AC02-05CH11231. The work was also supported by the NSF grants  DEB-1354625 and  IOS-1456958 . Sequencing of  Dothideomycetes …
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Ray Turner Completes Last Tour of Lab Duty at JGI
Ray oversaw the acquisition and renovation of Building 310, adding the crowning piece of the entire 80,000 square … roundtrip every day, conservatively estimated to be over 350,000 miles over 15 years). And for Ray’s prospective … to the ever-shifting landscape of funding Federal for programs, noted that “Ray is someone who just will get it …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… collecting data to understand the ERD process.  … The work (proposal:  10.46936/10.25585/60000717 ) conducted by the U.S. Department of … Energy Joint Genome Institute (JGI) ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported …
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Ben Bowen
NIH K25 Mentored Career Development awardee 1998-2003: NSF Graduate research training fellowship in biomolecular … spectrometry imaging. Analytical chemistry, 89(11), 5818–5823. Baran, R., Brodie, E., Mayberry-Lewis, J., Hummel, E., Da … computing and metabolite atlases. Metabolites, 5(3), 431–442. Yang, J., Rubel, O., Prabhat, Mahoney, M., & …
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When “The Blob” Made It Hotter Under the Water
… as hurricanes and droughts. Another one began in late 2013, when a large patch of warm ocean water about a third the … Laboratory (Berkeley Lab), as part of Hallam’s approved proposal through the Community Science Program . The proposal focuses on uncovering the metabolic networks …
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The Case for Conservation
… the value of their item. Part of that pleasure comes from finally having an answer to the question, “Why bother … of Evolution Rosemary Grant Award to S.B.C.; NSF DEB-1239992 to N.J.W.; the Emil Aaltonen Foundation and the … U.S. Department of Energy under contract no. DE-AC02-05CH11231. …
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Tracing the Evolution of Shiitake Mushrooms
Researchers sequenced 11 samples from Asia–Australasia and 13 samples from the Americas to trace the evolution … samples was a global collaboration that brought together 39 researchers from eight different countries. Genome and … by the HHMI and the Burroughs Wellcome Fund. The work (proposal:10.46936/10.25585/60001048) conducted by the US …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… microbes. In 2018, through a JGI Community Science Program proposal that started six years earlier, researchers put … with genomic DNA samples from Ruminococcus flavefaciens (XPD3002). With that sample, the Salk Institute team was able to …
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Understanding Wildfire Recovery, Starting in Soil
… work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed under the … at the Environmental Molecular Sciences Laboratory (proposal ID 49615), which is a DOE Office of Science User … Research and operated under contract number DE-AC05-76RL01830. Metagenomic and metatranscriptomic sequencing was …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… 10 times larger. And yet, while they are found everywhere, comparatively little is known about viruses, much less those … the world, including data from several DOE-mission relevant proposals through JGI’s  Community Science Program . … As a result, the giant virus protein space grew from 123,000 to over 900,000 proteins, and virus diversity in this …
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Learning to Look
By the numbers, the new approach detected inoviruses in 3,609 (6 percent) of the 56,868 microbial genomes and 2,249 of the 6,412 (35 percent) metagenomes mined for this study. “We’re simply … of these viruses, genomic analyses led the team to propose that the Inoviridae should be classified as an order …
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The JGI Data Portal: Improving User Experience
… areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of data, accessible through the Genome Portal. …
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