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The Power of One, Amplified
… single cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … microbial populations. The work appeared in The ISME Journal . Members of the Dunfield lab collected samples from …
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Tracking the Origins of Methane-Producing Microbes
… published in the Proceedings of the National Academy of Sciences , researchers at Stanford University, the Chan … These two things combined led us to conclude that our new methanogen did not belong to the Euryarchaeota, the … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Supercharging SIP in the Fungal Hyphosphere
… helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National … Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms … interactions. This work,  recently published in  The ISME Journal , by contrast, relied on methods that eschew … No. DE-AC02-05CH11231. JRS is supported by the NASA Astrobiology Institute Rock Powered Life grant. RS is supported …
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Simon Roux
… dynamics in soil microbial communities. … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in … with long standing virus-host interactions. The ISME Journal 15, 1569–1584. Nayfach et al., 2020. CheckV assesses …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group within … management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our understanding of the microbiome and the microbial …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … in developing and managing public viral genomics resources such as analytical tools and data repositories to two … has shed light on how the microbes in and on humans shape our health. A total of 16 projects have been approved, …
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JGI@25: Stories from Intern Alumni
… revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … share how these experiences have influenced their career journeys.     …
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Katherine Louie
… biological and environmental samples in support of user science.  Capabilities offered by the platform are a result … Discovery. 2020.  Reference Module in Chemistry, Molecular Sciences and Chemical Engineering.  DOI: …
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Crops as Tough as World Cup Turf
In our warming world, we’ll need corn, sorghum and other crops …
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A Collaboration to Improve Plant Genome Annotations Across Species
JGI Plant Gene Atlas is a huge updateable transcriptome resource spanning diverse plant species. It was developed to … and add additional gene function descriptions. This resource also helps in performing cross-species comparative … one of which is sweet sorghum Rio from a JGI Community Science Program project and another is Lupinus albus from a …
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JGI@25: From Life at the Extremes to Editing Genomes
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … Charpentier of the Max Planck Institute! This is the first science Nobel awarded to two women, with Charpentier and …
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