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BioPig: a Hadoop-based analytic toolkit for large-scale sequence data
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Protein structure determination using metagenome sequence data
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BAYESIAN SPATIAL-TEMPORAL MODELING OF ECOLOGICAL ZERO-INFLATED COUNT DATA.
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A universal language for finding mass spectrometry data patterns
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Taking Stock of the Known and Unknown Microbial Space
… global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. Department of … data are publicly available in the National Center for Biotechnology Information (NCBI) GenBank collection and on the … representation. “When it comes to isolate genome data, our real-world touchstones, we’re just scratching the …
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Identifying Aspects of the Post-Transcriptional Program Governing the Proteome of the Green Alga Micromonas pusilla
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DAP-seq Drives Robust Mapping of Gene Regulation
… scale of data enabled by these approaches creates a vast resource offering researchers the ability to chart regulatory … at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … broad applicability extends beyond plants. Currently, this technology is available to JGI users for studies on …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… large and giant. In a recent study  published in the journal  Nature , a team led by researchers at the U.S. … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Wisconsin-Madison, and the Georgia Institute of Technology focused on microbial communities from freshwater …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … in developing and managing public viral genomics resources such as analytical tools and data repositories to two … of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile …
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Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites
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Metabolic Potential for Reductive Acetogenesis and a Novel Energy-Converting [NiFe] Hydrogenase in Bathyarchaeia From Termite Guts – A Genome-Centric Analysis
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Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California
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