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Accelerating Metagenomics Discoveries with Deep Learning
… recognition: for example, a camera’s ability to recognize your face and distinguish it from your friend’s. Biologists … in proteins that low sequence identity may belie. The technology he’s using is magical; transform any length of … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
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Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
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Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Neha Varghese
… benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and projects through implementation of advanced …
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Extracting the Secrets of Secondary Metabolites
… helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not … make up the foundation for a slew of vital products in biotechnology, medicine, agriculture, and other industries — … monitor loss- and gain-of-function. The study’s analytical data shows peaks and valleys in secondary metabolites as …
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Igor Grigoriev
… genomics workshops. … Igor Grigoriev is the Fungal & Algal Science Program Head at the JGI. Click to learn more about … et al (2021) PhycoCosm, a comparative algal genomics resource.  Nucleic Acids Res. 49(D1):D1004-D1011 Swift et al … in Science, 2012 Editorial Board: BMC Fungal Biology and Biotechnology, Journal of Fungi, AIM Microbiology … Fungal & …
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JGI Early Career Researchers Featured in mSystems Special Issue
National Laboratory (Berkeley Lab). JGI is a DOE Office of Science user facility at Berkeley Lab.   … The U.S. … working to address some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science . … IMG/VR data portal …
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River microbiomes from around the world: Kelly Wrighton
… the world’s river microbiomes. And they’re using team science to do it.   …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into …
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