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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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Forming Scientific Connections and Building Community
… “ Exploring the epigenetic basis of pathogenicity in bacteria” Erika Maquiling : “Being a JGI intern means going …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… proposal includes plans to sequence several thousand Actinobacteria strains and then use computational tools to analyze … in sequencing secondary metabolite-producing environmental bacteria from the Tiny Earth collection. The work builds …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and transcriptome …
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Ben Bowen
Exometabolite niche partitioning among sympatric soil bacteria. Nature communications, 6(1), 8289. Yao, Y., Sun, …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… our focus on all the kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of … the genomes of 15 species from each of six kingdoms: eubacteria, archaea, protist, plant, fungi and animal. This … across different kingdoms, with archaea having around 15, eubacteria around 25, and eukaryotes having slightly larger …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… not harmful to humans could be even larger. Viruses infect bacteria, archaea and eukaryotes, and they range in particle …
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Nigel Mouncey
L. et al. 2022. Expanding the Genomic Encyclopedia of Actinobacteria with 824 Isolate Reference Genomes. Cell Genomics … activation of biosynthetic gene clusters in undomesticated bacteria. Nat Microbiol. 4: 2498-2510 Mouncey NJ et al. …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Honey Bee Gut Microbiota Divvy Up Dinner
… yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees rely on their gut microbiota … Academy of Sciences . The team focused on the dominant bacterial clades shared between honey bee and bumblebee gut … of the ileum and similar to the human large intestine. Both bacterial clades can metabolize hemicellulose and pectin. …
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