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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a tree falls in the forest — whether or not anyone registers the sound — … fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a … The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome … impact on the microbial communities within soil. Using metagenomics, scientists can shed light on hidden components, …
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Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria
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A synthesis of bacterial and archaeal phenotypic trait data
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match … characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … Korea as well as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley …
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Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Synergistic interactions between anammox and dissimilatory nitrate reducing bacteria sustains reactor performance across variable nitrogen loading ratios
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in … in the genome by adding tagged transcription factors to a genomic DNA library. “It’s an innovative way to rapidly … factors have been repurposed during evolution to control new functions,” O’Malley said. “Combining the two approaches …
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Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The … hybrid event, with guests joining onsite at the Integrative Genomics Building at Lawrence Berkeley National Laboratory … ways that her team is looking to use CRISPR-Cas9 to solve new problems. According to Doudna, the CRISPR-Cas9 …
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