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Steven Wilson
… 2018, Mr. Wilson has served as the Systems Engineering Group lead.   The group is responsible for developing and … applications that span the lifecycle of activities at JGI - proposal submission and review, project and work order … align and reach the associated goals. Mr. Wilson joined the JGI in 2002.  A fter supporting the sequencing core at …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Cultivating Symbiotic Antarctic Microbes
… and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … Aenigmarchaeota, Nanoarchaeota, and Nanohaloarchaea) superphylum of extremophilic archaea first outlined by JGI scientists and their collaborators in 2013. While most …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Development of this protocol was enabled by the JGI’s  Emerging Technologies Opportunity Program . The ETOP …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and … to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  Nature … ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the genome. …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of … belong to the nucleocytoplasmic large DNA viruses (NCLDV) supergroup. The expansion of the diversity for large and … mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the world, …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity hotspots Over … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite all the genomes we've sequenced, …
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Mapping the Earth’s Hidden Fungal Kingdom
… with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have been at the forefront of tackling this … artificial intelligence to genomics. The comparative datasets that revealed evolutionary patterns are now becoming …
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Making a Lichen Together
… more clearly. The Science The humble lichen is a superorganism: one being that is actually comprised of two … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the JGI contributed to annotation of the genomes, available …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Berkeley National Laboratory (Berkeley Lab) through the JGI Community Science Program (CSP) .  Through this … which explores genomics of algal diversity and biology to support basic science as well as bioenergy and …
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Ian Blaby
… at the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain … biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory where he focused … 11. 2023 Liu et. al., Bacterial genome editing by coupling Cre-lox and CRISPR-Cas9 systems. PloS one. 15: 11. …
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Virus Discoveries that Keep Getting Bigger
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … diversity, and how sequencing and bioinformatics have sped up the study of giant viruses. The Impact In their existence … approach for giant virus genomic discovery.  In 2020, a JGI-led team used this approach to deliver novel viral …
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