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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… platform — has been developed to help inform scientists and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to correlate protein … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… in New Mexico via leakage from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides … ethene. Applying genome sequencing and analysis, the researchers identified other bacteria and microbial … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … entities,  further outlined in the journal  Nucleic Acids Research in November 2022.  One of GOLD’s strengths has been …
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Tracking the Origins of Methane-Producing Microbes
… in the Proceedings of the National Academy of Sciences , researchers at Stanford University, the Chan Zuckerberg … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … Yellowstone National Park’s Obsidian Pool hot spring. The researchers applied mini-metagenomics to these samples by …
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The Expanding Universe of Methane Metabolisms in Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly … known methanogens. With the help of this information, the researchers found evolutionary relationships between … the known number of Korarchaeota genomes, which helped the researchers position the lineage within the archaeal domain. …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal … for AI-driven studies of energy metabolism. The Science Researchers produced nearly 10,000 new annotations of fungal …
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Promoting the Power of Viral Metagenomics
… summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen Nayfach and  Nikos Kyrpides , … to affect nearly every aspect of our daily lives.  But for researchers who study viruses that infect organisms much … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… the complex organic matrix of the forest floor, a team of researchers have found that there is a striking division of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … for User Science (FICUS) initiative, which allows researchers to integrate the expertise and capabilities of …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations with the JGI began … plant genomes. She has appeared on the annual Highly Cited Researchers list assembly by Clarivate Analytics. In 2020, … across the country. The national consortium involved researchers at the University of Texas at Austin, …
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How Filamentous Fungi Sense Food
… model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a … present in plant biomass. This is of interest for bioenergy researchers looking to improve the industrial production of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Marine Microbe Contains Multitudes
… lead author Dominique Boeuf and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Berkeley National Laboratory (Berkeley Lab), through the JGI Community Science Program . The metagenomes were also …
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Triggering Morel Fruiting
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on … acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide … uncultivable wild mushrooms, until Ronald D. Ower, a researcher from San Francisco State University, developed a …
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