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JGI Workshop at SIMB NP Meeting
… often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters … (JGI), a DOE Office of Science User Facility, has been developing and applying new genomics capabilities that address these issues. Check the scientific program for relevant posters. …
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Finding the Fermenters
… the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … bioproducts. Summary Researchers at the University of California, Davis and UC Santa Barbara generated a list of … They then used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on …
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Reevaluating the Salty Divide: Phylogenetic Specificity of Transitions between Marine and Freshwater Systems
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Crysten Blaby-Haas
… joint user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and … Blaby-Haas CE. (2024) A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in … light on microbial dark proteins. Nature Rev Micro 22, 63. Davidi L, Gallaher SD, Ben-David E, Purvine SO, Fillmore TL, …
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Forming Scientific Connections and Building Community
… experiences and what they’ll take with them as they go forward in their careers.   Listed below are the interns, … “ Development of a multiplex genomic integration system for the selection of genes essential for specialized carbon utilization ” Jesica Calderon : …
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A Collaboration to Improve Plant Genome Annotations Across Species
… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement for plants. As part of that partnership, the JGI and … data from two ecotypes of  Panicum hallii and multiple switchgrass ( Panicum virgatum ) experimental data. Sarah:  …
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Microbiome Data Science Team
… analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … analysis of Big Data. The Research Team   … The research efforts of the group have concentrated in demonstrating the … with a special focus on microbiome research.  These efforts include exploration of the global diversity of …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
…   The JGI is excited to announce the 18 scientists selected for our 2025 Community Science Program Annual Call. These … (BER) missions in sustainable biofuel and bioproducts production, global carbon and nutrient cycling, and … Investigator and Functional Genomics calls, here on our website.   See below for the full list of 2025 CSP Annual Call …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … after his time at the JGI) as a helpful influence for both developing the method and publishing the paper. “I would say … ) was influential in “creating an early algorithm and developing it in order to talk about the subgenome …
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who translate genomic information into biological function. Through our CSP … carbon sequestration into sustainable biomaterials, and developing high-throughput methods to reveal metabolic …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
… on its head and opens up a new avenue to explore for efficient biofuel production. …
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Capturing the genetic makeup of the active microbiome in situ
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