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Forming Scientific Connections and Building Community
… pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome … say about their experiences and what they’ll take with them as they go forward in their careers.   Listed below are the … here.” Mentor: Lorenzo Aureli Project: “ Exploring the epigenetic basis of pathogenicity in bacteria” Erika Maquiling …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address … the fungi side, underground mycorrhizal networks can serve as a reservoir for carbon compounds that plants generate … for tuning this symbiosis. “Those are great candidates for genetic engineering. Our hope is that the community at large …
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10 From JGI on the 2019 Highly Cited Researchers List
… Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly Cited Researchers , … Genomics Lead Dan Rokhsar , Molecular Biology & Genetics Staff Data Scientist Asaf Salamov, Plant & Animal …
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Atif Shahab
… Since 2012, Mr. Shahab has led the development of an integrated platform for … management. He has worked at several renowned institutions, developing solutions for large-scale sequencing projects and … BS in Electrical Engineering, University of New South Wales, Australia; MS …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … previously unseen — is, in fact, a microscopic water mold, genetically related to such aquatic species as diatoms and …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding … strains of haloarchaea from different Antarctic lakes. To assess the genomic variation in haloarchaea, they also … a haloarchaea “pan-genome.” Described as the total pool of genetic material comprised by all members of a species, the …
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The INSIG2 rs7566605 genetic variant does not play a major role in obesity in a sample of 24,722 individuals from four cohorts
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in microbial oil … their tool before felling their research problem: at a genetic level, how does  Y. lipolytica work? The project was … This work was supported by DOE Joint Genome Institute grant  CSP-503076 …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of … The bacterial endosymbiont, Burkholderia , is recognized as a mutualist, where both species of organism benefit from … a likely key to this evolutionary transition. Using this model, researchers also generated the first transcriptomic …
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Natural Prodcast Episode 18: A CSP Primer
… DAN UDWARY: It’s been a while, but Natural Prodcast is back … info about the CSP, FICUS, New Investigator and Functional Genomics calls. For my audience, all of these programs can … Episode Transcript … The main page for information about CSPs JGI’s Data Release Policy A statement on DOE Mission relevance If you have …
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Tracing the Evolution of Shiitake Mushrooms
… the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the … By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, this work … enzymes these fungi use to break down wood, and compares genetic diversity between cultivated and wild shiitake …
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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing libraries from minimal DNA input …
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