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… in giving a voice to JGI users who feel that certain data sharing policies fail to represent the needs of large … unaware that [public but use-restricted] exist on [the JGI data portal] IMG or how to deal with situations in which they inadvertently analyzed use-restricted data without contacting the lab that generated that data,” …

… it to the community. 2014: GENCODE project begins. To support growing sorghum and other C4 plants for biofuel … Plant Datasets …

… natural products, O’Malley and her team plan to use genetic tools to boost production and isolate the compounds. … This research project was supported by a grant from Santa Barbara Cottage Hospital and … (JGI) and DE-AC05-76RL01830 (EMSL). CLS is also supported by a National Science Foundation Graduate Research …

… and research scientist in Nikos Kyrpides’  Microbiome Data Science group. “What makes this study really stand out … Adding Value Beyond Genome Sequences Much of the data had been generated from environmental samples  … Eloe-Fadrosh noted that it was a nice example of “big-data” mining to gain a deeper understanding of the data and …

… to link experimental evidence across species. Centralized databases with large-scale transcriptome projects such as … is an updateable resource. To demonstrate that, we included datasets from two species, one of which is sweet sorghum Rio … seven more groups joined the project to contribute to the data for six new species. I must mention that some of the …

… and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two … hair. At such resolution, this spatial transcriptomics data captured molecular information from both plant cells … in addition to associated plant genes.  All together, these data offer a granular view of both plant and fungal activity …

… on sequences for MAR enzymes from different organisms to support this system.  Based on the nitrogenase-like nature … enzymes. The structure along with EPR spectroscopy supported a second catalytic metallocofactor as  seen with … National Laboratory, is committed to advancing genomics in support of DOE Office of Science Biological and …

… Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein databases, like UniProt, exist, are not specific enough for … from their soil samples. This gene expression dataset was particularly important for characterizing fungal …

… Populus across genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  …

… Lead Dan Rokhsar , Molecular Biology & Genetics Staff Data Scientist Asaf Salamov, Plant & Animal Science category … to develop guidelines and best practices for defining virus data quality. Reported in Nature Biotechnology, the work … source, methods of identification of the virus genome, and data quality. Go here to learn more about the project. …