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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Enrichment of root-associated Streptomyces strains in response to drought is driven by diverse functional traits and does not predict beneficial effects on plant growth
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Yasuo Yoshikuni
… efficient than glycolysis., Nature Chemical Biology , 2024 Dubinkina et al., A transcriptomic atlas of acute … of a soil viral auxiliary metabolic gene product - a functional chitosanase., Nature Communications , 2023 Zhao … , 2022 Ke and Yoshikuni, Development of platforms for functional characterization and production of phenazines …
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Genome sequence of Streptomyces sp. DSM 42143
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First Monoploid Reference Sequence of Sugarcane
… now underway as part of the JGI Community Science Program (CSP), a critical factor in developing sugarcane as a … in part on these positive results, in 2017, JGI approved a CSP proposal from the international team to complete the …
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Uncovering Novel Genomes from Earth’s Microbiomes
… and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … with a host – with 23,000 MAGs. Modeling A New Path for Metagenomics Researchers Building upon these resources, KBase, a … metabolic models were generated from the GEM dataset, metagenomics researchers might consider branching into this …
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Computationally Classifying Fungal Lifestyles
… enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward …
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Philympics 2021: Prophage Predictions Perplex Programs
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The Earth BioGenome Project 2020: Starting the clock
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JGI@25: Strengthening Soybean
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A Model System for Perennial Grasses
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