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SIPs with Standards
… for studying microbial communities. These experiments can show which microbes are handling specific nutrients, or what they're doing with those nutrients, and even how quickly. … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible …
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A Social Science Experience
… 2017 Summer Interns Share Highlights of their time at the JGI …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm … fungal genomes on the JGI data portal MycoCosm . They looked for genes known to be involved in fungal-host …
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JGI-USCCN Strain Sequencing Opportunity
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Honey Bee Gut Microbiota Divvy Up Dinner
… complex polysaccharides. Honey bees are invaluable pollinators — cupids of the plant world facilitating the remixing of genes in the next … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Webinar: Introducing the BioSANS capability
The BioSANS instrument is at the Center for Structural Molecular Biology (CSMB) at Oak … (BioSANS) instrument when applying to the FY2022 EMSL-JGI FICUS call for proposals. Presentations from: Scott Lea, …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … and implementing new technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Kaushal Sharma, one of five Antioch High School rising juniors who participated in internships at the DOE Joint Genome Institute this … the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s …
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At the Forefront of Terrestrial Virus Research
Gary Trubl is finishing his PhD in Microbiology at The Ohio State University, co-advised by Drs. Virginia Rich and Matthew Sullivan. He shared a few thoughts on his summer at JGI through a program that provides graduate thesis research …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As …
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