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Alabama A&M Interns Access An Abundance of Knowledge
… and Alabama A&M University piloted an internship program to bring students to the JGI for research training experience. Enabled by the … and graduate student LaMonika Dent worked with JGI mentors Yi Zhai and John Vogel on researching the effects of …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open access ecological data to better understand how U.S. ecosystems are changing.  … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Team Science Reveals Important Protein in Poplar
… crops The Science Scientists at Brookhaven National Laboratory (BNL) led a team that  identified a protein … increased lignin and iron, engineered poplar can be used to develop bioproducts for industrial applications. For … User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). because of its utility for …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to applying artificial intelligence to aspects of research …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… researchers described how the viruses repeatedly attempted to infect and destroy the host archaea – and how the  … but the viruses that infect Altiarchaea cause the cells to burst. This action triggers subsurface carbon cycling, … which can serve as a food source for other microbes into the environment. Summary In J. R. R. Tolkien’s “The Lord …
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A Complex Confection Decoded: Sugarcane Reference Genome
… reference quality genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar … With the genetic code of sugarcane, researchers were able to map the location of genes that provide resistance to the …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The … approach to reconstruct and model gene regulatory pathways used by the filamentous fungus  Neurospora crassa, and … complex chains are available; this information triggers pathways to determine which enzymes should be deployed in what …
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Fungal Friends or Foes in Plant Roots
… boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is like an office building, its roots are akin to the ground floor lobby. People walking into the lobby have many reasons for being there, but they’re not always immediately apparent. Similarly, the microbes found in …
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Statement on the Use of Genomics Data
… of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through open access to resources and promoting data sharing to accelerate discovery and maximize the benefit to society. … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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The JGI Data Portal: Improving User Experience
… download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only accessible via Phytozome, the improvements it encompasses are more broadly applicable to the download processes from the other JGI Portals, as … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Building Sphagnum Genomic Resources
… (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on … microbes prevent methane production by routing the carbon away from methanogens. In The ISME Journal, a team led by … found that these species encode a sulfate reduction pathway, but also have genes for sulfide oxidation. The findings …
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An Automated Tool for Assessing Virus Data Quality
… have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of … Environmental DNA sequencing can help scientist to recover the genomes of these viruses and associate them … fragmented data, which limits the ability of researchers to accurately perform functional assessment, host …
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