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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … off the anti-CRISPRs made by the co-infecting phages in the same host cell, relying on their shared desire to avoid …
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Green Algae Reveal One mRNA Encodes Many Proteins
… messenger RNA, which encodes a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples of polycistronic expression – in which two or … article. The research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science … an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, … genetic underpinnings responsible for these traits takes us closer to harnessing algae for bioenergy and the greater …
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Introducing New Members of the JGI User Executive Committee
The JGI welcomes three new members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State … and can serve no more than two consecutive terms. In late 2021, the JGI launched a solicitation for nominations for …
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Triggering Morel Fruiting
A collaborative team led by Hao Tan from the Sichuan Academy of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is triggered when …
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Virus-Microbe Interactions of Mud Island Mangroves
Rambo, a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research … carbon cycling in coastal mangroves. His work centers on samples collected on Mud Island – “it’s essentially a mud …
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Evolution of a Fungal Gene Expression Regulator
… the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in … but is not well understood in fungi. A team of researchers reported on the largest analysis of 5mC distribution across … the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions … the 10 MAGs reconstructed in the study, five were from undersampled or previously undescribed lineages, and the other …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic … time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … that contribute to a sustainable bioeconomy. Summary The 27 samples studied by researchers came from two environments: …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of their most important functions. … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Science Program (CSP) .  Through this collaboration, in 2017, they published the first genome sequence of a …
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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back to … years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community driven science for … Plant Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and …
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate Director for Computational … project, Professor Dr. Rokhsar ’s team has continued to develop computational methods applicable to the diverse … and evolutionary biology. Dr. Rokhsar’s research is focused on understanding the origin, evolution, and diversity …
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