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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an … methods to discover new anti-CRISPRs,” said Adair Borges, a graduate student in bacterial immunologist Joe …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his … Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the … experience will help them direct their career trajectories. Finally, we anticipate that as this program grows there will …
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Better Crops With a Pointillist Approach to Plant Genomics
In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which … and more. And eventually, their findings could help us grow better crops, with less impact on our planet. …
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Crops as Tough as World Cup Turf
In our warming world, we’ll need corn, sorghum and other crops to grow well in worse conditions: … from grasses into other crops.  One grass they studied just happened to be the same species that covered World Cup …
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Honey Bee Gut Microbiota Divvy Up Dinner
… of the National Academy of Sciences . The team focused on the dominant bacterial clades shared between honey … pollen’s pectin and hemicellulose are degraded mainly by just two clades:  Gilliamella,  which mostly resides in the … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… the genetic codes of plants is often challenging because in many plants chromosomes are present in more than two … Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, developed a method to correctly … an early algorithm and developing it in order to talk about the subgenome identity.”  These days, Session is …
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Toward More Efficient Artificial Photosynthesis
The Science Chloroplasts are the factories in plant cells. Using photosynthesis, they take raw materials including … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the European Research Council grant (ERC 637675 ‘SYBORG’), as well as the US Department of Energy Joint Genome …
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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A Natural Mechanism Can Turbocharge Viral Evolution
The Science The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at … injection of mutations in a particular gene might boost an organism’s fitness. Moreover, the discovery of more than …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… and increasing demand for agricultural products.  Sorghum bicolor (L.) Moench is an African grass that adroitly … (UC), Berkeley, UC Agriculture and Natural Resources (ANR), US Department of Agriculture P­­lant Gene Expression Center, … and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Back to the Future! A Sorghum Story
You might know sorghum as an edible grain. But there are some sorghum … were developed specifically to turn their biomass into sustainable biofuel and bioproducts. John Mullet, a biologist at Texas A&M University, tells us how sorghum’s historical — and literal — roots could play …
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