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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, … collections, transformation technology, epigenetic analysis techniques) and utilizing these resources to understand … and depletion of soil metabolites by a model grass New Phytologist 222: 1149-1160 …
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science … of DNA synthesis, strain engineering, and biosystems design for DOE-mission-relevant discovery and applications. This … of non-model yeasts for production of biofuels and renewable chemicals, developing genome engineering tools for …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth … in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The …
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You Can Move, But You Can’t Hide
Researchers at the JGI develop a tool to quickly and accurately … affect a microbe’s ability to cycle nutrients or produce new chemicals. They can also affect ecosystems by killing … framework that combines and builds on two standard techniques for identifying viruses and plasmids. Until now, …
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Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions
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IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
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Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome … works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement … groups joined the project to contribute to the data for six new species. I must mention that some of the members from …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … from environmental samples — to identify over 27,000 microbial genes. These genes were identified based on their …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, … McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater … So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put …
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that … & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able … of 328 “high quality” (based on completeness) diverse new virophage genomes containing all four core genes. These …
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JGI on the 2020 Highly Cited Researchers List
Congratulations to the 2020 Highly Cited Researchers at the JGI! … highly-cited papers that rank in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 … that led to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples …
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