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A Sorghum Pangenome Opens More Doors to Discovery
… Genome Sequencing Center and a member of the JGI Plant Program. Lovell was a senior author on this work with Nadia … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … from a much broader view than ever before. With this information, researchers can link genetic variation more …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the following … . Zoospores were then collected by centrifugation. This process was repeated multiple times in order to obtain …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and … a bioeconomy, where renewable, biological resources drive processes, products, and services.  Advancing the bioeconomy … DOE Office of Biological and Environmental Research (BER) program. In service of solutions that will impact society, …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … senior author  Tanja Woyke , who heads JGI’s  Microbial Program . The team mined more than 8,500 publicly available … Computing Center (NERSC) , another DOE Office of Science User Facility located at Berkeley Lab. Principal …
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DAP-seq Drives Robust Mapping of Gene Regulation
… when and where genes are activated to sustain life’s processes.  Traditionally, mapping this intricate network of … DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Aligned with DOE Biological and Environmental Research program goals, this work helps advance a fundamental …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with excitement and determination as … XML/Python Based Quality Control to Database/Java Based Process in Gold Sandra Hernandez Gonzalez and mentor Hualan … Carlos Vazquez and mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan …
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Waiting to Respire
… (and at one time, the spouse of Lynn Margulis). The information was then used to predict the metabolic … the Bigelow Laboratory for Ocean Sciences, Microbial Genome Program head Tanja Woyke of the U.S. Department of Energy … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and research scientist Frederik Schulz in …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from the …
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Boosting Small Molecule Production in Super “Soup”
… as proteins, and the mechanisms for maintenance to keep processes running smoothly. As reported August 26, 2021, in … supported through the Emerging Technologies Opportunity Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… understanding of how these bacteria evolved could help inform engineering microorganisms for biofuel production and … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, has … metabolic capabilities offer insights into how microbial processes might be harnessed for applications including …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… that would be produced by microorganisms — out,” said JGI user/collaborator Michelle O’Malley, a chemical and … industrial facilities will need large-scale approaches to processing plant biomass. Here, cud-chewers like goats, … an important talent. In their herbivorous lives, they all process loads of tough plants. Thanks to gut microbes — …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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