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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … here in a glass capillary), researchers sequenced and assembled the first complete genome of an uncultured symbiont. …
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Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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JGI & KBase at PAG XXVII
Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE … in the Moss Ceratodon 7:09 PM Bioinformatic Approach to Discovering Promoters Regulating Poplar Drought Response 7:27 …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, … team used proteomics, genomics and transcriptomics to discover another advantage these fungi wield: the capacity to form enzyme complexes that work like assembly lines for efficiency.  In 2021, her team saw that …
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Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et
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JGI Earth Month: Wetlands Work in #TenHundredWords
April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… plant, fungi and animal. This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified … species, each organism has a relatively small set of around 20 ATs. These ATs have maintained a small and relatively … kingdoms, with archaea having around 15, eubacteria around 25, and eukaryotes having slightly larger numbers due to …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in the … . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used …
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Uncovering Novel Genomes from Earth’s Microbiomes
… methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s … by 44%, is now available and  described November 9, 2020 in  Nature Biotechnology . Known as the GEM (Genomes … we were able to reconstruct thousands of metagenome-assembled genomes (MAGs) directly from sequenced environmental …
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Frederik Schulz
Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes … University of Vienna (Austria) … Krinos et al. 2024. Time-series metagenomics reveals changing protistan … FY2021 Austrian Academy of Sciences Fellowship (2011-2015) DAAD (“German Academic Exchange Service”) scholarship …
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