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Alabama A&M Interns Access An Abundance of Knowledge
… In 2024, the DOE Joint Genome Institute and Alabama A&M University piloted an … Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant microbiome. They also took part in many enriching …
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Webinar: MycoCosm Tutorial
… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … only “true fungi”? A(nswer): Our focus is on fungi, algae, plants, and the microbial world but we also annotated … there a tool in this platform to search fungal genomes in metagenomes? A: Search in metagenomes is available from …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … nutrients from decaying organic matter (saprobes), and many plant pathogens known to infect most major food crops and … clusters showed a >95 % accuracy in correctly predicting plant pathogens (blue) vs saprobes (green). (From Haridas S …
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JGIota: The Algae Nicknamed ‘Chlamy’
… – that’s managed to have a big impact. UC Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other organisms – like plants. [ Editor’s Note: Merchant is also a faculty …
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A Shrubbier Version of Rubber
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The Genome Portal of the Department of Energy Joint Genome Institute
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The Phaeodactylum genome reveals the evolutionary history of diatom genomes
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JGI User Executive Committee Expands
… Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … Baxter is a principal investigator at the Donald Danforth Plant Science Center, where his group focuses on interactions underlying plant adaptation in different environments. He’s been …
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Effects of sample treatments on genome recovery via single-cell genomics
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
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Eelgrass Proves to Be Much Younger Than We Thought
… believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in Japan before spreading … Their research, published in  August 2023 in  Nature Plants , was able to assess absolute time estimates for … form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the …
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Evolution of a Fungal Gene Expression Regulator
… in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures … than 500 species of fungi. The Impact Interactions between plants and fungi run the gamut from mutually beneficial to antagonistic. In fungi, 5mC is often found in transposable …
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