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CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria ( PLoS Biol … (“contigs”) from thousands of ecologically diverse metagenomics samples. The work is supported by NIH Common …

Avinash: In the initial planning phase, there were about 10 groups that came together to standardize the experimental …

… from an external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic …

… (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …

… first started out the natural product community was almost 100% bacterial. Only people working in mycotoxins worked … mostly coming out of China and India, very cheap for $100-$200. But you have so many contigs. This is a problem … Basidiomyetes might get to 50. Some of them go to over 100. There. That can be the problem. Whereas the bacteria, …

… the JGI has pioneered, including single-cell genomics and metagenomics. The GEBA initiative has also utilized a very … combined with nearly 5,000 publicly available ones and 1,100 metagenome-assembled genomes (MAGs) reconstructed from …

… collaboration has been incredibly productive; more than 10 papers, including two Nature Plants publications, in five …

… out of the green pods in every direction. There are 100 million families around the world whose livelihoods … these things take not five or eight years, but sometimes 10 or 15 years, because the technology develops over time.” …