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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … 2 of our “primer” episode, so if you ended up here somehow without having listened to the first part, you might be a … has been really crucial.  DAN: Yeah, yeah. The more data you generate, the more knowledge you can generate. So …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… user facility. The staff and resources shifted to offering genomic science capabilities for energy and environmental … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The … J., Martin, J., Terry, A. et al. The DNA sequence and comparative analysis of human chromosome 5. Nature. 431, …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic … By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Learning to Look
… distinguishing features. Several characters may be spotted with a striped scarf, striped hat, round-rimmed glasses, or … to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus
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Triggering Morel Fruiting
… JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the following guest piece, JGI user Dr. … the fruiting-related decomposition mechanisms of morel with multi-omic approaches, our results revealed a striking …
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SPRUCE-ing Up Science
… his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … Oak Ridge, Tennessee. Recently, Lawrence, in collaboration with researchers from ORNL, Lawrence Berkeley National … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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Examining the cause of high inbreeding depression: analysis of whole‐genome sequence data in 28 selfed progeny of Eucalyptus grandis
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Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype
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A comparative genomics study of 23 Aspergillus species from section Flavi
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Comparative Genomics and Transcriptomics to Analyze Fruiting Body Development in Filamentous Ascomycetes
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