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Measurement of bacterial replication rates in microbial communities
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Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology
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Missing microbial eukaryotes and misleading meta-omic conclusions
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Maast: genotyping thousands of microbial strains efficiently
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The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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User Advisory Committees
… on the effective management and strategic objectives of the microbial and metagenome programs. The committee serves as …
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Ian Blaby
… Wales, Cardiff, Genetics Ph.D. – University of Cambridge., Microbial molecular biology Post-doctoral positions  – … genome editing by coupling Cre-lox and CRISPR-Cas9 systems. PloS one. 15: 11. 2020 Blaby & Cheng, Building a … in plant science . 19: 10, 672-680. 2014 Blaby, et. al., Systems-level analysis of nitrogen starvation–induced …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… event will bring together researchers across major ecosystems and disciplines who are developing and applying laboratory ecosystems to help transition microbiome science from largely … is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for precise manipulation and …
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From Competition to Cooperation
… lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader … lineages. To learn why, researchers analyzed 135 fungal genomes representing major fungal families, including those for which there were previously no genomes of symbiotic species available: 73 saprotrophs and …
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Kjiersten Fagnan
… Dr. Fagnan was on the organizing committees for the ASCR Integrated Research Infrastructure - Architecture Blueprint … including the JGI portals, and our broader data ecosystem. … Selected Publications …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … Mouncey. Using CRAGE, JGI has established a portfolio of microbial hosts that users can select to be engineered. … has already demonstrated CRAGE as a versatile engineering system that allows scientists to conduct genome-wide screens …
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