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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … in GOLD. “Besides these, he curated several small sets of phylogeny, biosample metadata tasks we assigned.”       …
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Exploring Proteomes of Robust Yarrowia lipolytica Isolates Cultivated in Biomass Hydrolysate Reveals Key Processes Impacting Mixed Sugar Utilization, Lipid Accumulation, and Degradation
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Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park
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Genome Sequence of Kosmotoga olearia Strain TBF 19.5.1, a Thermophilic Bacterium with a Wide Growth Temperature Range, Isolated from the Troll B Oil Platform in the North Sea
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability and … for technical help, feedback or a guided walk-through of the new Data Portal.  …
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A Complex Confection Decoded: Sugarcane Reference Genome
… Sugarcane was the last major crop without a reference quality … most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … the French Agricultural Research Centre for International Development (CIRAD), and the U.S. Department of Energy (DOE) …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the … related to clean energy generation and environmental characterization and cleanup. The JGI provides integrated …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles … team learned that some bacterial families carry genes for degrading monoterpenes such as α-pinene, as well as genes … ) conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 …
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Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533T, a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer … touch with the JGI.” Mentors: Yi Zhai & John Vogel Project: Characterization of Brachypodium distachyon root … journey.” Mentors: Deze Kong & Yasuo Yoshikuni Project: “ Development of a multiplex genomic integration system for …
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The fungus that made itself at home
… Retracing how the dry rot Serpula lacrymans adapted to a new … plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the … down only the cellulose and hemicellulose, leaving the lignin behind. The brown rot Serpula lacrymans is typically …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex … The shrub willow differentiates into males and females, a development conferred by its sex chromosomes. In humans, … 31561123001, 31500502, 41871044), National Key Research and Development Program of China (2017YFC0505203, …
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