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Identifying the Microbial Cleanup Crew at a Superfund Site
PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified other … growth. In this instance, vegetable oil was injected into a specific type of food that was in the contaminated aquifer …
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Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
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Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome … avoid making the same mistakes,” he said. “Although in my specific case the projects are different for the two …
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Eelgrass Proves to Be Much Younger Than We Thought
… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … meadows are responsible for almost one-third of carbon sequestered in the ocean. In addition to providing a more … ahead, scientists can use this information to assess what specific traits make older species of eelgrass in the …
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Dan Rokhsar
… and led the computational efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … means using proteins on its tail fibers to latch onto a specific target on the microbial cell’s membrane. Two … support from the EMERGE Institute (NSF #2022070). Sequencing of the Stordalen Mire samples used herein was …
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Long-term warming modulates diversity, vertical structuring of microbial communities, and sulfate reduction in coastal Baltic Sea sediments
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements … value to the other commonly used culture-independent sequencing approaches including amplicon and metagenomic … was similar across sequencing approaches, that species specific sets of single cells harbored mobile genetic …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key role in determining the composition of the Earth’s atmosphere and regulating the global climate … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes
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Genome sequence of the Litoreibacter arenae type strain (DSM 19593T), a member of the Roseobacter clade isolated from sea sand
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