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The More the Merrier: Making the Case for Plant Pan-genomes
Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … these datasets, researchers made a pan-genome containing four  B. hybridum  genomes and many  B. distachyon genomes. … with a maternal  B. distachyon parent (D plastotype) some 1.4 million years ago (Mya), while the S plastotype was a …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … challenges.   The Human Genome Project began in 1990 when the U.S. Department of Energy (DOE) partnered with …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome … Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in … with long standing virus-host interactions. The ISME Journal 15, 1569–1584. Nayfach et al., 2020. CheckV assesses …
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A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities
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JGI@25: Building a Better Bean
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … the common bean. That work was published online June 8, 2014 in the journal Nature Genetics . “Common beans are a …
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Len Pennacchio
… at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University … a vision for future technical JGI directions for DOE User science. … Complete Publications Genomic Technologies … of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  Co-Chair, “Advances in Genome Biology & …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … single step, directly into the genome. “CRAGE is central to our ability to offer host-engineering for our users,” says … select group of bacterial strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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Four amino acids define the CO2 binding pocket of enoyl-CoA carboxylases/reductases
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Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?
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Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi
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Nick Everson
JGI Operations which include the Safety, Finance, Human Resources, Facilities, IT, Shipping and Receiving, Lab … previously served as JGI’s Business Manager from 2007 to 2012, overseeing all financial and logistics activities.  He … Haas School of Business Served as a reviewer for DOE’s Science & Operations Peer Review of the Center for …
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Cracking the Secrets of the Diatom’s Shell
Biofuels and bioproducts are a way to kick our addiction to fossil fuels. In this episode, we peek into … BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy Bioenergy Research Centers.  …
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