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CSP New Investigator Call
… proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals for this call may be submitted at … Proposers are encouraged to review the JGI’s sample requirements . Samples … below to schedule time with Tanja Woyke, Deputy for User Programs. Technical and Scientific Leads will also be …
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CSP Functional Genomics
… Proposers are encouraged to review the JGI’s sample requirements . Samples … below to schedule time with Tanja Woyke, Deputy for User Programs. Technical and Scientific Leads will also be … Additional Resources …
Learn more
Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the Earth’s … as carbon sinks and minimize their role as carbon sources. Summary Sphagnum, a genus of just under 400 mosses … Harvesting peat for energy has been increasingly discouraged due to associated greenhouse gas emissions as well …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how researchers can gain access to the Advanced Photon Source (APS) at Argonne National Laboratory when applying to … Science (FICUS) Call Karolina Michalska , Advanced Photon Source at Argonne National Laboratory: “Advanced Photon …
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2023 Progress Report
… Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … complex biological and environmental systems. We optimize our service to the community through responsibly managing our people and resources.   Director's Perspective   Honors …
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Supercharging SIP in the Fungal Hyphosphere
… helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National … Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science …
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Promoting the Power of Viral Metagenomics
… and  Nikos Kyrpides , was  recently published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a … power that viruses have to affect nearly every aspect of our daily lives.  But for researchers who study viruses that …
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Tracking the Origins of Methane-Producing Microbes
… published in the Proceedings of the National Academy of Sciences , researchers at Stanford University, the Chan … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the discovery of a novel … These two things combined led us to conclude that our new methanogen did not belong to the Euryarchaeota, the …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … sets for the Loxahatchee Refuge,  was published in the journal  Environmental Microbiome . “Before JGI was involved, …
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Doubling Down on Known Protein Families
… big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … diversity has doubled, but in reality it could be three or four or five or tenfold more out there.” Digging Further into …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… potential for AI-driven studies of energy metabolism. The Science Researchers produced nearly 10,000 new annotations … within existing public databases and recovered more than 3,000 others from environmental datasets. All of the … standardized structure of the dataset position it as a resource for AI-driven approaches to predicting fungal …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome … tools, and the DOE’s emerging AI-enabled capabilities for science.  Dr. Sneddon is an accomplished leader in data, … in bacteria. Proceedings of the National Academy of Sciences of the United States of America 109(3), 805–810 …
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