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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … process. The isotope labeling incubations can take hours to months, followed by weeks of tricky, laborious lab … improving data collection, analysis and reporting.  Thirty-four attendees came together for the workshop, including …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of … and impactful analysis of microbiome data that has changed our understanding of the microbiome and the microbial …
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single … scientists with accepted proposals free access to their resources. … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Accelerating Metagenomics Discoveries with Deep Learning
… recognition: for example, a camera’s ability to recognize your face and distinguish it from your friend’s. Biologists aim to capitalize on these kinds of … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of …
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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Mieux connaître les virus présents sur Terre grâce aux métagénomes
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately identify mobile … National Laboratory (Berkeley Lab), with computing resources provided by NERSC, another user facility at Berkeley … was employed to build version 4 of the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 million viral …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of … large and giant. In a recent study  published in the journal  Nature , a team led by researchers at the U.S. … unicellular hosts,” Schulz added. The work also used resources of the  National Energy Research Scientific Computing …
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Team Science Reveals Important Protein in Poplar
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to produce desirable traits.  Partly enabled by the JGI  Community Science Program New Investigator program , … Functional Nanomaterials (CFN), National Synchrotron Light Source (NSLS-II), the Molecular Foundry and the Joint …
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Help from Citrus’ Bitter, Hardier Cousin
… citrus, trifoliate orange ripens only bitter, intensely sour fruit. Yet this plant, native to China and now … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … authors of the  recent study published in  The Plant Journal.  this study included the discovery of candidate …
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Boosting Small Molecule Production in Super “Soup”
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … able to make the same amount of a product in just eight hours that growing cells take three days to make, which is a … something that sounds feasible in retrospect – ‘Of course you can rewire one and get the other’ – but, that was …
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