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Learning to Look
… distinguishing features. Several characters may be spotted with a striped scarf, striped hat, round-rimmed glasses, or … are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not … work also used resources of the  National Energy Research Scientific Computing Center , another DOE Office of Science …
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Soil virus offers insight into maintaining microorganisms
… can have a significant impact on the microbial communities within soil. Using metagenomics, scientists can shed light … were retrieved using the  JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) data portal. The IMG suite is … to be found within soil viruses and AMGs. It could spawn future research into understanding why these AMGs exist in …
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New Research Sheds Light on Diversity in the Deep Sea
… seeps through cracks in the Earth’s crust and reacts with very hot rocks below, becoming an extremely hot, … and functioning of a given microbial community. Scientists with the U.S. Department of Energy Joint Genome Institute, a … datasets are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) portal. The study,  published …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… challenges. The JGI offers these solutions to the worldwide scientific community through its  User Programs on a … and recaps of all three keynote talks follow, starting with Bruce Hungate. Other videos of talks from the JGI … that “this makes forming hypotheses and the way we go about future biological research much clearer.” Newman asked the …
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An Integrated Dataset to Understand Ecosystem Interaction
… and how healthy they are, a recent data set  outlined in  Scientific Data connects molecular features to large … revealed key metabolic pathways and metabolites associated with the tree’s stress response. Finally, using … (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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Creating an Energy Market for Miscanthus
… addition to your garden and a potential fuel for the future. But, to be competitive in the market, both energy …
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Genomes OnLine database (GOLD) v.7: updates and new features
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Functional genomics gives new insights into the ectomycorrhizal degradation of chitin
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… our  2022 Annual Meeting . The meeting was a hybrid event, with guests joining onsite at the Integrative Genomics … 2020 Nobel Prize in Chemistry. She then pivoted towards the future and shared ways that her team is looking to use … . Susan Wessler , UC Riverside Shaping up conservative genomes Keynote Talk Title: Transposable Element-Mediated …
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Cultivating Symbiotic Antarctic Microbes
… of soil-sediment environments, water and air-atmosphere with the humans and the biosphere), including the global … consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … genome sizes and their cells were not observed to associate with host cells. In the  Proceedings of the National Academy …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… patterns of Puerto Nuevo’s coastal waters and sediment with collaborators at the Center for Scientific Research and Higher Education at Ensenada … intimidating. That first exposure from great interactions with Dr. Ben Cole and Dr. Axel Visel led to being co-advised …
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The fungus that made itself at home
… a DOE Office of Science User Facility, compared the genomes of two strains of fungi Serpula lacrymans – var. … and var. shastensis from North America – against a third fungal Serpula species, S. himantioides from Europe, that … to see how the Serpula fungi have adapted in an environment with little to no competitors for resources. On wood blocks …
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