Results

A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
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Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… produced by living organisms. The collaboration between the JGI and the Foundry on this project highlights an  ongoing partnership that combines the JGI’s genomic capabilities with the Foundry’s nanoscale … $1.4 million annually.  The team is working on developing new microbial strains that can synthesize other bio-based …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid … are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) metagenomes … sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for …
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Atif Shahab
… led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project … Management Systems (LIMS), bioinformatics, and genomics data management. He has worked at several renowned … BS in Electrical Engineering, University of New South Wales, Australia; MS in Computer Science, …
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Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to … uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics Program Fellow at the Gordon …
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A Plant Root Atlas for Tracking Developmental Trajectories
… and combining the information with previously published datasets. The work was  recently published in the journal  … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … a foundational data set that is now available through a new  single-cell data viewer that was collaboratively …
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Picking Up Threads of Cotton Genomics
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … for Biotechnology. “The goal has been for all this new cotton work, and even the original cotton project was to … D are available for comparative analysis on JGI’s plant data portal  Phytozome , which is a community repository and …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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Transcriptomic data sets for Novosphingobium aromaticivorans DSM12444 and a ΔSARO_RS14285 mutant grown in the presence of glucose and either protocatechuic, vanillic, syringic, or 4-coumaric acid
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Hiroshi Otani
… research activity is focused on developing and implementing new technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and … 2022 Jun 17;13(1):3502. Udwary DW, Otani H, Mouncey NJ. New keys to unlock the treasure trove of microbial natural …
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